UoN CS+IT ASAP

James Smaldon

James Smaldon
James Smaldon
ASAP, School of Computer Science and IT
University of Nottingham
Jubilee Campus, Wollaton Road
Nottingham, NG8 1BB, UK

Tel: +44 115 95 14234
jqs@cs.nott.ac.uk
Ph.D. Student

Artificial Chemical Vesicles: Modelling and Computation
Research Interests
DPD Simulation, Membrane Computing, Bio-Inspired Algorithms, P Systems, Simulation, Modelling, Synthetic Biology, Systems Biology
Room
C77
Supervisor
Dr. N Krasnogor
Hits
hits since Thursday, October 12, 2006

Research

I am currently researching meso-scale simulations of vesicles using Dissipative Particle Dynamics.

Publications

Book Chapters

Automated Self-Assembling Programming. L. Li, P. Siepmann, J. Smaldon, G. Terrazas and N. Krasnogor. Systems Self-Assembly: Multi-Disciplinary Snapshops, Elsevier, In press. (TOC)

Papers

Smaldon J, Krasnogor N, Alexander C, Gheorghe N. "Liposome Logic" Proceedings of the 10th annual conference on genetic and evolution computation (GECCO 2009), Montreal, Canada, 2009, pp. 161-168. (pdf, 3.5MB)

Smaldon J, Blakes J, Lancet D, Krasnogor N. "A Multi-scaled Approach to Artificial Life Simulation With P Systems and Dissipative Particle Dynamics" Proceedings of the 9th annual conference on genetic and evolutionary computation (GECCO 2008, Atlanta, USA, 2009, pp. 249-256. (pdf, 620kb)

J. Smaldon and A.A. Freitas, "A new version of the ant-miner algorithm discovering unordered rule sets.", Proceedings of the 8th annual conference on genetic and evolutionary computation (GECCO 2006), Seattle, USA, 2006, pp. 43-50. (pdf, 300kb)

J. Smaldon and A.A. Freitas "Improving the interpretability of classification rules in sparse bioinformatics datasets", Research and Development in Intelligent Systems XXIII - Proc. AI-2006, Springer, 2006, 377-381

Posters

Smaldon J, Krasnogor N. "A New Method for Prototyping Systems Biology Designs with P systems", presented at Genomes to Systems 2008 Manchester, UK. (pdf, 1.8mb)

Smaldon J, Krasnogor N. "From Formal P System Specifications to Real Membranes", Presented at the European Conference on Synthetic Biology 2007, Sant Feliu de Guixols. (pdf, 860kb)


Links

The CHELLNet Project
The P Systems Web Page
Synthetic Biology Web Page
Dissipative Particle Dynamics Wikipedia Entry
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